José García de la Torre

 

LIST OF PUBLICATIONS

 


246. J. García de la Torre and J.G. Hernández Cifre "Fundamentals and computer programs for the prediction and analysis of experimental data in size-exclusion chromatography with multiple detection. Determination of conformational parameters". In C. Valencia, F.J. Navarro, J.M. Franco (Eds.) Progress in Polymer Science and Engineering, GEP, Huelva, Spain. Vol. 1, pp. 31-32 (2018). ISBN 978-84-16621-78-1.

 

245. K. Zhu, R. Pamies, N. Al-Mansir, J.G. Hernández Cifre, J. García de la Torre, B. Nyström and A.-L. Kjøniksen, "The effect of number of arms on the aggregation behavior of thermoresponsive poly(N-isopropylacrylamide) star polymers", Physical Chemistry Chemical Physics, submitted (2018).

 


244. J. García de la Torre, A. Ortega, J.G. Hernández Cifre "Hydrodynamics of Nucleic Acids: Modeling Overall Conformation and Dynamics". In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag, Berlin-Heidelberg. Vol. 2, pp. xx-xx (2018). Online. DOI: 10.1007/978-3-642-35943-9_299-1.


243. J. García de la Torre, A. Ortega, J.G. Hernández Cifre "Crystallohydrodynamics of IgG". In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag, Berlin-Heidelberg. Vol. 1, pp. xx-xx (2018). Online. DOI: 10.1007/978-3-642-35943-9_298-1.

242. J. Garcia de la Torre, J.G. Hernández Cifre, A.I. Díez Peña, "Prediction and analysis of analytical ultracentrifugation experiments for heterogeneous macromolecules and nanoparticles based on Brownian dynamics simulation", Eur. Biophys. J., 47, 845-854 (2018). [PDF]  Also: Supporting information [PDF]

 

241. J. J. López Cascales, S. Zenak, J. Garcia de la Torre, O. Guy Lezama, A. Garro and R.D. Enriz, "Small cationic peptides: influence of charge on their antimicrobial activity", ACS Omega, 3, 5390-5398 (2018).

 

240. J. M. Contreras, P. Sevilla, A. Cámara Artigas, J.G. Hernández Cifre, B. Rizzuti, F.J. Florencio, M.I. Muro Pastor, J. Garcia de la Torre and J.L. Neira, "The cyanobacterial ribosomal-associated protein LrtA from Synechocystis sp. PCC 6803 is a oligomeric protein in solution with chamaleonic sequence properties", Int. J. Mol. Sci., 19, 1857, 21 pages (2018). [PDF]

 

239b. J. Garcia de la Torre and J.G. Hernández Cifre, "The HYDRO software for solution properties of bio-macromolecules and nanoparticles", Eur. Biophys. J., 46, S214 (2017).

 

239. E. Laborda, A. Molina, V. Fernández Espín, F. Martínez-Ortiz, J. Garcia de la Torre and R.G. Compton, "Single fusion events at polarized liquid-liquid interfaces", Angew. Chem. Int. Ed., 56, 782-785 (2017).

 

238. J. García de la Torre, “The HYDRO Software Suite for the Prediction of Solution Properties of Rigid and Flexible Macromolecules and Nanoparticles”. In S. Uchiyama, F. Arisaka, W.F. Stafford, T.M. Laue (Eds.) Analytical Ultracentrifugation. Instrumentation, Software and Applications, Springer Japan, Tokyo, ISBN-978-4-431-55983-2,  Chapter 11, pp. 195-217 (2016).

 

237. J. L. Neira, S. Martinez-Rodriguez, J.G. Hernandez-Cifre, A. Camara-Artigas, P. Clemente, S. Peralta, M.A. Fernandez-Moreno, R. Garesse, J. Garcia de la Torre and B. Rizzuti, "Human COA3 is an oligomeric highly flexible protein in solution", Biochemistry, 55, 6209-6220 (2016).

 

236. J. L. Neira, E. Medina-Carmona, J.G. Hernandez-Cifre, L. Montoliu-Gaya, A. Camara-Artigas, I. Seffouh, F. Gonnet, R. Daniel, S. Villegas, J. Garcia de la Torre, A.L. Pey and F. Li, "The chondroitin sulfate/dermatan sulfate 4-O-endosulfatase from marine bacterioum Vibrio sp FC509 is a dimeric species: biophysical characterization of an endosulfatase", Biochimie, 131, 85-95 (2016).

 

235. M. J. Urban, I.T. Holder, M. Schmid, V. Fernández Espín, J. Garcia de la Torre, J.S. Hartig and H. Coelfen, "Shape analysis of DNA-Au hybrid particles by analytical ultracentrifugation", ACS NANO, 10, 7418-7427 (2016).

 

234. F. M. Almutairi, J.G. Hernandez Cifre, G.G. Admas, M.S. Kok, A.R. Mackie, J. Garcia de la Torre and S.E. Harding, "Application of recent advances in hydrodynamic methods for characterising mucins in solution", European Biophysics Journal, 45, 45-54 (2016).

 

233. A. Ayllon Benitez, J.G. Hernandez Cifre, F.G. Diaz Baños and J. Garcia de la Torre, "Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA", BMC Biophysics, 8, 11, 9 pages (2015). [PDF]

 

232. T. de Diego Puente, J. Gallego Jara, S. Castaño Cerezo, V. Bernal Sanchez, V. Fernandez Espin, J. Garcia de la Torre, A. Manjon Rubio and M. Canovas Diaz, "The Protein Acetyltransferase PatZ from Escherichia coli Is Regulated by Autoacetylation-induced Oligomerization", Journal of Biological Chemistry, 290, 23077-23093 (2015).

 

231. H. Zhao,... A. Diez,... J. Garcia de la Torre,... J.G. Hernandez Cifre,... and P. Schuck, "A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation", PLOS ONE, 10, e016420, 30 pages (2015). [PDF]

 

230. R. Rodriguez Schmidt, J.G. Hernandez Cifre and J. Garcia de la Torre, "Multi-scale simulation of hyperbranched polymers", Polymers, 7, 610-628 (2015). [PDF]

 

229. M. M. Collado Gonzalez, V. Fernandez Espin, M.G. Montalban, R. Pamies, J.G. Hernandez Cifre, F.G. Diaz Baños, G. Villora and J. Garcia de la Torre, "Aggregation behavior of gold nanoparticles in presence of chitosan", J. Nanopart. Res., 17, 268, 10 pages (2015).

 

228. J. G. Hernandez Cifre and J. Garcia de la Torre, "Ionic strength effect in polyelectrolyte dilute solutinos within the Debye-Huckel approximation: Monte Carlo and Brownian dynamics simulations", Polymer Bulletin, 71, 2269-2285 (2014).

 

227. R. Pamies, J. G. Hernandez Cifre, V. Fernandez Espin, M. Collado Gonzalez, F.G. Diaz Baños and J. Garcia de la Torre, "Aggregation bahavior of gold nanoparticles in saline aqueous media", J. Nanopart. Res., 16, 2376-11 (2014).

 

226. F.G. Diaz Baños, A.I. Diez, J. G. Hernandez Cifre, M. Carmen López Martínez, A. Ortega and J. Garcia de la Torre, “Influence of ionic strength on the flexibility of alginate studied by size exclusion chromatography”, Carbohydrate Polymers, 102, 223-230 (2014).

 

225. R. Domenech, J.G. Hernández Cifre, J. Bacarizo, Ana I. Díez, S. Martínez-Rodríguez, C.N. Cavassoto, J. García de la Torre, A, Cámara-Artigas, A. Velázquez, J.L. Neira, “The histidine-phosphocarrier protein of the phosphoenolpyruvate: sugar phosphotransferase system of Bacillus sphaericus self-associates”, PLOS ONE 8, e69307 (2013). [PDF]

 

224. J. Collado-González, Z.N. Cruz, P. Rodríguez, A. Galindo, F. Guillermo Díaz-Baños, J. García de la Torre, F. Ferreres, S. Medina, A. Torrecillas, A. Gil-Izquierdo. “Effect of the water deficit and domestic storage on the procyanidins content and size in pear-jujube (Z. jujuba ) fruits”, Journal of Agricultural and Food Chemistry 61, 6187-6197 (2013).

 

223. Ana I. Díez, J.M. Ortiz Guerrero, A. Ortega, M. Elías-Arnanz, S. Padmanabhan, J. García de la Torre, “Analytical ultracentrifugation studies of oligomerization and DNA-binding of TtCarH, a Thermus thermophilus coenzyme B12-based photosensory regulator”, European Biophysics Journal,  42, 463-476 (2013).

 

222. J. García de la Torre, Stephen E. Harding, “Hydrodynamic modelling of protein conformation in solution: ELLIPS and HYDRO”, Biophysical Reviews, 5, 195-206 (2013).

 

221. D. Amorós, A.Ortega, J. Garcia de la Torre “Prediction of hydrodynamic and other solution properties of partially disordered proteins with a simple, coarse-grained model”

Journal of Chemical Theory and Computation, 9, 1678-1685 (2013).

 

220. J. García de la Torre, A. Ortega, “HYDRO Suite of Computer Programs for Solution Properties of Rigid Macromolecules”. In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag Berlin Heidelberg, Vol. 2 pp. 1002- 1006 Online:
DOI: 10.1007/SpringerReference_308328 2013-01-15 17:09:56 UTC (2013).

 

219. A. Ortega, J. García de la Torre, “HYDFIT and Related Packages for Linear Molecules”. In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag Berlin Heidelberg,  Vol. 2 pp. 998- 1002. Online: DOI: 10.1007/SpringerReference_309578 2013-01-15 17:12:28 UTC (2013).


218. A. Ortega, J. García de la Torre Crystallohydrodynamics of IgG. In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag Berlin-Heidelberg, Vol. 1 pp. 397- 403. Online:DOI: 10.1007/SpringerReference_308331 2013-01-15 17:10:01 UTC (2013).

217. García de la Torre J.,Hydrodynamics of Nucleic Acids: Modeling Overall Conformation and Dynamics”. In Roberts G. (Ed.) Encyclopedia of Biophysics, Springer-Verlag Berlin Heidelberg Vol. 2 pp. 1024- 1029. Online . DOI: 10.1007/SpringerReference_319187 2013-01-15 17:14:48 UTC (2013).

 

216. R. Rodriguez Schmidt, J.G. Hernández Cifre, J. García de la Torre, “Translational diffusion coefficients of macromolecules” Eur. Phys. J. E, 35:130, 5 pages (2012).

 

215.  R. Rodríguez Schmidt, D. Amorós, J.G. Hernández Cifre,  F.G. Díaz Baños, J. García de la Torre, “Simulation of dilute-solution properties of biological macromolecules with the aid of high-performance computing”, in Proceedings of the International Conference on Modelling and Simulation, M. Affenzeller, Editor, Springer Verlag, ISBN-978-88-97999-02-7, pages 248-253 (2012).

 

214. A, Ortega, R. Pamies, K. Zhu, A. L. Kjøniksen, B. Nyström, J. García de la Torre, “Characterization of low molecular mass thermosensitive diblock copolymers and their self-assemby by means of analytical ultracentrifugation” , Colloid and Polymer Science 290, 297-306 (2012).

 

213. A. Maleki, K. Zhu, R. Pamies, R. Rodríguez Schmidt, A.L. Kjøniksen, G. Karlsson, J. G. Hernández Cifre, J. García de la Torre, B. Nyström, “Effect of polyethylene Glycol (PEG) length on the association properties of temperature-sensitive amphiphilic triblock copolymers (PNIPAAMm-b-PEGn-b-PNIPAAMm) in aqueous solution”, Soft Matter 7, 8111-8119 (2011)

 

212. R. Rodriguez Schmidt, J.G. Hernández Cifre, J. García de la Torre “Comparison of Brownian dynamics algorithms with hydrodynamic interaction”, Journal of Chemical Physics, 135, 084116, 10 pages (2011)

 

211. A. Ortega, D. Amorós, J. García de la Torre, “Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models” Biophysical Journal  101, 892-898 (2011). Also: Supporting information.  

 

210. D. Amorós, A. Ortega, J. García de la Torre, “Hydrodynamic properties of wormlike macromolecules: Monte Carlo simulation and global analysis of experimental data”, Macromolecules 44, 5788-5797 (2011)  Also: Supporting information.

 

209. A. Diez, A.Ortega, J. García de la Torre, “Brownian dynamics simulation of analytical ultracentrifugation experiments”, BMC Biophysics, 4:6, 7 pages   (2011).   [PDF]

 

208. A. Ortega, D. Amorós, J. García de la Torre, “Global fit and structure optimization of flexible and rigid macromolecules and nanoparticles from analytical ultracentrifugation and other dilute solution properties” Methods, 54, 115-123 (2011). 

 

207. J. García de la Torre, F.G. Díaz Baños, H.E. Pérez Sanchez “Kerr constant of multi-subunit particles and semiflexible wormlike chains” Journal of Physics – Condensed Matter, 22, 494104 (8 pages) (2010).

 

206. R. Rodríguez Schmidt, R. Pamies, A.L. Kjoniksen, K. Zhu, J. G. Hernandez Cifre. B. Nystrom, J. García de la Torre, « Single-molecule behavior of asymmetric thermoresponsive amphiphilic copolymers in dilute solution », Journal of  Physical Chemistry B, 8887-8893 (2010)

 

205. J. García de la Torre, A. Ortega, D. Amorós, R. Rodríguez Schmidt, J. G. Hernández Cifre, “Methods and tools for the prediction of hydrodynamic coefficients and other solution properties of flexible macromolecules in solution. A tutorial minireview”, Macromolecular Bioscience, 10, 721-730 (2010). .

 

204. J. García de la Torre, “Una visión histórica y algunos problemas actuales de la Química Física de las macromoléculas. Leccion inaugural curso 2010”  Academia de Ciencias, Región de Murcia, I.S.B.N. : I978 – 84 – 613 – 7097 – 9 ;   D.L. M U – 2671 – 2009 (2010).      

 

203. B. Nystron, A.L. Kjoniksen, N. Behesti, A. Maleki, K. Zhu, K.D. Knudsen, R. Pamies,  J. G. Hernández Cifre, J. García de la Torre “Characterization of polyelectrolyte features in polysaccharide systems and mucin” Advances in Colloid and Interface Science, 158, 108-118 (2010).  

 

202. J. García de la Torre, D. Amorós and A. Ortega “Intrinsic viscosity of bead models for macromolecules and nanoparticles” European Biophysics Journal  39, 381-388 (2010) . 

 

201. R. Pamies, R. Rodríguez Schmidt, M.C. López Martínez, J. García de la Torre, “The influence of mono and divalent cations on dilute and non-dilute aqueous solutions of sodium alginates”, Carbohydrate Polymers, 80, 248-253 (2010).   

 

200. D. Amorós, A. Ortega, S. E. Harding and J. García de la Torre. Multi-scale calculation and global-fit analysis of hydrodynamic properties of biological macromolecules: determination of the overall conformation of antibody IgG molecules”. European Biophysics Journal  39, 361-370 (2010).

 

199. G.M. Pavlov, D. Amorós, C. Ott, I.I. Zaitseva, J. Garcia de la Torre, U.S. Schubert, “Hydrodynamic analysis of well-defined flexible linear macromolecules of low molecular mass” Macromolecules 42, 7447-7455 (2009).  

 

198. G. del Río Echenique, R. Rodríguez Schmidt. J.J. Freire, J.G. Hernández Cifre, J. García de la Torre , “A multiscale scheme for the simulation of conformational and solution properties of some dendrimer molecules”, Journal of the Americal Chemical Society 131, 8549-8556 (2009)

 

197. J. García de la Torre, J.G. Hernandez Cifre, A. Ortega, R. Rodríguez Schmidt, M.X. Fernandes, H.E. Pérez Sánchez, R. Pamies, “SIMUFLEX: Algorithms and tools for simulation of the conformation and dynamics of flexible molecules and nanoparticles in dilute solution”, Journal of  Chemical  Theory and Computation 5, 2606-2618 (2009) 

 

196. T. R. Patel, G. Morris, A. Ebringerova, M. Vodenikarova, V. Velebny, A. Ortega, J. Garcia de la Torre, S.E. Harding, “Global conformation analysis of irradiated xyloglucans” Carbohydrate Polymers 74, 845-851 (2008)    

 

195. G. Morris, P. Mischnick, A. Ortega, J. Garcia de la Torre, S.E. Harding, “Molecular flexibility of methylcelluloses of different degree of substitution by combined sedimentation and viscosity analysis”, Macromolecular Bioscience 8, 1108-1115 (2008) 

 

194. J. G. Hernández Cifre, G. Del Rio Echenique, J. García de la Torre, “Dendrimer-like star-branched polymers under flow”, in “Rheology in Product Design and Engineering”, A. Guerrero and J.M. Franco, Eds. GER, Madrid. (ISBN 978-84-608-0779-7)

 pp. 193-195 (2008)

 

193. R. Pamiés, J. G. Hernández Cifre, M.C. López Martínez, J. García de la Torre, “Determination of intrinsic viscosities of macromolecules and nanoparticles. Comparison of single-point and dilution procedures”, Colloid and Polymer Science 286, 1223-1231 (2008)

 

192. G.A. Morris, J. Garcia de la Torre, A. Ortega, J. Castile, A. Smith and S.E. Harding, Molecular flexibility of citrus pectins by combined sedimentation and viscosity analysis, Food Hydrocolloids, 22, 1435-1442 (2008)

 

191. J. García de la Torrre, J.G. Hernández Cifre, M.C. López Martínez, “Prediction of solution properties of flexible-chain polymers in dilute solution. A computer-simulation undergraduate experiment”, European Journal of Physics  29, 945-956 (2008)

 

190. G.A. Morris, T.R. Patel, D. Picout, S.B. Ross-Murphy, A. Ortega, J. Garcia de la Torre and S.E. Harding, Global hydrodynamic analysis of the molecular flexibility of galactomannans, Carbohydrate Polymers 72, 356-360 (2008).

 

189. Y. Lu, S. Harding, T. Michaelsen, E. Longman, K.G. Davis, A. Ortega, G. Grossman, I. Sandlie and J.Garcia de la Torre, “Solution conformation of wild type and mutant IgG3 and IgG4 immunoglobulins using crystallohydrodynamics: possible implications for complement activation” Biophysical Journal  93, 3733-3744 (2007).

 

188. A. Ortega, J. García de la Torre, “Equivalent radii and ratios of radii from solution properties as indicators of macromolecular shape, conformation and flexibility” Biomacromolecules  8, 2464-2475 (2007) .

 

187. R. Pamies, J.G. Hernández Cifre,  J. García de la Torre, “Brownian dynamics simulation of polyelectrolyte dilute solutions: relaxation time and elongational flow” Journal of Polymer Science, Part B, Polymer Physics 45, 714-722 (2007).

 

186. J. Garcia de la Torre, “Dynamic electro-optic properties of macromolecules and nanoparticles in solution. A review of computational and simulation methodologies”  Colloids and Surfaces B, 56, 4-15 (2007).

 

185. J.G. Hernández Cifre, R. Pamiés, A.L. Kjoniksen, K.D. Knudsen, B. Nystrom , J. García de la Torre, “Brownian dynamics simulation of reversible polymer networks using a non-interacting bead-and-spring chain model” Journal of Non-Newtonian Fluid Mechanics, 146, 3-10 (2007).

 

184. G. del Rio Echenique, J. G. Hernández Cifre, E. Rodríguez, A. Rubio, J. J. Freire, J. García de la Torre,Multi-Scale simulation of the conformation and dynamics of dendrimeric macromolecules”, Macromolecular Symposia 245, 386-389 (2007) DOI: 10.1002/masy.200651353 .

 

183. R. Pamies, J.G. Hernandez Cifre, J. Garcia de la Torre, “Brownian dynamics simulation of polyelectrolite dilute solutions under shear flow” Journal of Polymer Science, Part B Polymer Physics  45, 1-19 (2007).  DOI: 10.1002/polb.20994.

 

182. E. Rodríguez, J.J. Freire , G. del Río Echenique, J.G. Hernández Cifre and J. García de la Torre: “Improved simulation method for the calculation of the intrinsic viscosity of some dendrimer molecules”, Polymer  111, 955-961 (2007) .

 

181. J. Garcia de la Torre, G. del Rio Echenique and  A. Ortega  “Calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles”, Journal of Physical  Chemistry B  111, 955-961 (2007)

 

180. J.G. Hernández Cifre, R. Pamies, M.C. López Martínez and J. García de la Torre, “Relaxation time of non-linear polymers in dilute solution via computer simulation”,  Journal of Non-Crystalline Solids 352, 5081-5086 (2006). 

 

179. H.E. Pérez Sánchez, K. Tatarenko, M. Nigen, G. Pavlov, A. Imberty, H. Lortat-Jacob, J. García de la Torre and C. Ebel, “Organization of human interferon gamma-heparin complexes from solution properties and hydrodynamic modelling”, Biochemistry 45, 13227-13238 (2006).

 

178. J. Garcia de la Torre, F.G. Diaz Baños and H.E. Perez Sanchez, “Computacional methods for dynamic electro-optic properties of macromolecules in solution”, in “Molecular and Colloidal Electrooptics”, S. Stoilov and M.V. Stoimenova, Eds., Taylor and Francis, New York, pp. 109-133 (2006).

 

177. Y. Lu, E. Longman, E. Longman, K.G. Davis, A. Ortega, G. G. Grossmann, T. E. Michelsen, J. Garcia de la Torre and S.E. Harding “Crystallohydrodynamics of protein assemblies: combining sedimentation, viscometry and x-ray scattering”,   Biophysical Journal, 91, 1688-1697 (2006). 

 

176. J. Garcia de la Torre, A. Ortega and H.E. Perez Sanchez, “Solution properties of flexible macromolecules. Theoretical and computacional approaches”, in “Analytical Ultracentrifugation: Techniques and methods”, D. J. Scott, S.E. Harding and A. Rowe, Royal Society of Chemistry, Oxford, pp. 449-467 (2006).

 

175. N. Vesti, H. Bu, K. Zhu, A.Kjoniksen, K.D. Knudsen, R. Pamies, J.G. Hernandez Cifre and J. Garcia de la Torre, “Characterization of interactions in aqueous solution of hydroxyethylcellulose and its hydrophobically modified analogue in the presence of  a cyclodextrin derivative”, Journal of Physical Chemistry B, 110, 6601-6608 (2006). 

 

174. A. Ortega y J. García de la Torre “Efficient, accurate calculation of rotational difusión and NMR relaxation of globular proteins from atomic-level structures and approximate hydrodynamic calculations”, Journal of the American Chemical Society, 127, 12764-12765 (2005). 

 

173. J. G. Hernández Cifre, R. Pamiés, M.C. López Martínez and J. García de la Torre, “Steady-state behavior of star polymers in dilute flowing solutions via Brownian Dynamics”, Polymer, 46, 6756-6766 (2005).

 

172. J. García de la Torre, P. Bernadó and M. Pons. “Hydrodynamic models and computacional methods for NMR relaxation”, Methods in Enzymology, 349, 419-430 (2005).   

 

171. H.E. Pérez Sánchez, J. García de la Torre y F.G. Díaz Baños. “Transient electric birefringence of wormlike macromolecules in electric fields of arbitrary strength. A computer simulation study”, Journal of Chemical Physics, 122, 124902-1 – 124902-13 (2005)   

 

170. J. García de la Torre, A. Ortega, H.E. Pérez Sanchez and J. G. Hernández Cifre, “MULTIHYDRO and MONTEHYDRO: Conformational search and Monte Carlo calculation of solution properties of rigid and flexible macromolecular models”  Biophysical Chemistry, 116, 121-128 (2005)  

 

169. R. Pamies, M.C. López Martínez, J.G. Hernández Cifre y J. García de la Torre. “Non-Newtonian viscosity of dilute polymer solutions”  Macromolecules, 38, 1371-1377 (2005)  

 

168. J.G. Hernandez Cifre, R. Pamies, M.C. López Martínez y J. García de la Torre”Steady-state behavior of ring polymers in dilute flowing solutions via Brownian Dynamics”, Polymer , 46, 267-274, (2005)  

 

167. S.E. Harding, E. Longman, A. Ortega, K. Kreusel, S.B. Tendler, K.K King and J. García de la Torre. “Use of the sedimentation coefficient for modelling antibodies. Refinements to the crystallohydrodynamics approach”, Progr.  Colloid and Polym. Sci,  127, 113-119 (2004)

 

166. J. García de la Torre, J.G. Hernández Cifre, M.C. López Martínez y R. Pamies. “Simulation of the non-Newtonian viscosity of dilute polymer solutions”. Progress in Rheology of Biological and Synthetic Polymer Systems; A.C. Diogo et al, Eds., ISBN: 972-99301-0-4, pp. 193-196. Ed. GER-SPR, Portugal.

 

165. P. Bernadó, J. García de la Torre y M. Pons. “Macromolecular crowding in biological systems: hydrodynamics and NMR methods”. Journal of Molecular Recognition, 13, 397-407 (2004).  

 

164. J.G. Hernández Cifre and J. García de la Torre. “Orientation of Polymer Chains in Dilute Solution Under Shear. Effect of Chain Model and Excluded Volume”. Macromolecular Theory and Simulation, 13, 273-279 (2004).  

 

163. P. Bernadó, M.X. Fernández, D.M. Jacobs, K. Fiebig, J. García de la Torre and M. Pons. “Interpretation of NMR relaxation properties of Pin1, a two-domain protein, based on Brownian dynamic simulation”. Journal of Biomolecular NMR, 2, 21-35 (2004).  

 

162. S.E. Harding, E. Longman, B. Carrasco, A. Ortega and J. García de la Torre. “Studying antibody conformations by ultracentrifugation and other hydrodynamic modelling”. “Methods in Molecular Biology” Vol. 51: Antibody Engineering Protocols,  2nd Edition (Ed. B. Lo.). pp. 93-113. Ed. Humana press, Totowa, New Jersey, U.S.A. (2003).

 

161. J. García de la Torre and A. Ortega. “Hydrodynamic properties of rod-like and disk-like particles in dilute solution”. Journal of Chemical Physics, 114, 9914-9919 (2003).  

 

160. H.E. Pérez Sánchez, J. García de la Torre and F.G. Díaz Baños. “Birefringence, Deformation and Scattering of Wormlike Macromolecules Under an External Agent. Steady-State Properties in an Electric Field”. Journal of Physical Chemistry B, 107, 13192-13200 (2003).  

 

159. J.G. Hernández Cifre and J. García de la Torre. “Radiation Scattering by Dilute Polymer Solutions in Shear Flow: An Example of Mesoscale Modelling and Brownian Dynamics Simulation”. Applied Rheology 13, 200-208 (2003).  

 

158. J. García de la Torre, H.E. Pérez Sánchez, A. Ortega, J.G. Hernández Cifre, M.X. Fernandes and M.C. López Martínez. Calculation of solution properties of flexible macromolecules. Methods and applications”. European Biophysics Journal 32, 477-486 (2003).  

 

157. M.C. López Martínez, F.G. Díaz, A. Ortega y J. García de la Torre. “Multiple Linear Least-Squares Fits with a Common Intercept. Application to the Determination of Intrinsic Viscosity of Macromolecules in Solution”. Journal of Chemical Education 80, 1036-1038 (2003).  

 

156. P. Bernadó, T. Akerud, J. García de laTorre, M. Akke and M. Pons. “NMR Relaxation Evidence for Tetramers of Low Molecular Weight Protein Tyrosin Phosphatase in Solution”. Journal of the American Chemical Society 125, 916-923 (2003).  

 

155. E. Longman, K. Kreusel, S.B. Tendler, I. Fiebig, K. King, J. Adair, P. O’Shea, A. Ortega, J. García de la  Torre and S.E. Harding. “Estimating domain orientation of two human antibody IgG4 chimeras by crystallohydrodynamics”. European Biophysics Journal 32, 503-510 (2003).  

 

154. M.X. Fernandes and J. García de la Torre, “Brownian Dynamics Simulation of Rigid Particles of Arbitrary Shape in External Fields” Biophysical Journal 83, 3039-3048 (2002).  

 

153. M.X. Fernandes, J. García de la Torre  and M.A.R.B. Castanho. "Joint determination by Brownian dynamics and fluorescence quenching of membrane biomolecules in-depth location profile". Analytical Biochemistry 307, 1-12  (2002).  

 

152. P. Bernadó, J. García de la Torre and M. Pons, “Interpretation of 15NMR relaxation data of globular proteins using hydrodynamic calculations with HYDRONMR, Journal of Biomolecular NMR, 23, 139-150 (2002).  

 

151. M.X. Fernandes, M.A.R.B. Castanho and J. García de la Torre. "Brownian Dynamics simulation of the unsaturated lipidic molecules oleic and docosahexanoic acid confined in a cellular membrane". Biochimica et Biophysica Acta  (Biomembranes) 1565, 29-35 (2002).  

 

150. J.G. Hernández Cifre, M.C. López Martínez and J. García de la Torre. "Conformation and dynamics of star-branched flexible polymer chains in flowing solution". Journal of Non-Crystalline Solids  307-310, 818-823 (2002).  

 

149. H.E. Pérez Sánchez, J. García de la Torre and F.G. Díaz. "Influence of Field Strength and Flexibility in the Transient Electric Birefringence of Segmentally Flexible Macromolecules". Journal of Physical Chemistry B, 106, 6754-6761 (2002).  

 

148. M.X. Fernandes, A. Ortega, M.C. López Martínez and J. García de la Torre. "Calculation of hydrodynamic properties of small nucleic acids from their atomic structures". Nucleic Acids Research  30 (8), 1782-1788 (2002).  

 

147. J. Garcia de la Torre and B. Carrasco. "Hydrodynamic Properties of Rigid Macromolecules Composed of Ellipsoidal and Cylindrical Subunits". Biopolymers 63, 163-167 (2002).  

 

146. J. García de la Torre. "Building hydrodynamic bead-shell models for rigid particles of arbitrary shape". Biophysical Chemistry 94, 265-274 (2001).  

 

145. J. G. Hernández Cifre and J. García de la Torre. "Kinetic aspects of the coil-stretch transition of polymer chains in dilute solution under extensional flow". Journal of Chemical Physics 115, 9578-9584 (2001).  

 

144. B. Carrasco, J. García de la Torre, K.G. Davis, S. Jones, D. Athwal, C. Walters, D.R. Burton and S. Harding.  "Crystallohydrodynamics for solving the hydration problem for multi-domain proteins: open physiological conformations for human IgG". Biophysical Chemistry  93, 181-196 (2001).  

 

143. M.X. Fernandes, P. Bernado, M. Pons and J. García de la Torre. "An Analytical Solution to the Problem of the Orientation of Rigid Particles by Planar Obstacles. Application to Membrane Systems and to the Calculation of Dipolar Couplings in Protein NMR Spectroscopy ". Journal of the American Chemical Society 123, 12037-12047 (2001).  

 

142. J. García de la Torre. "Hydration from hydrodynamics. General considerations and applications of bead modelling to globular proteins". Biophysical Chemistry 63, 159-170  (2001).  

 

141. J. García de la Torre, O. Llorca, J.L. Carrascosa and J.M. Valpuesta. "HYDROMIC: Prediction of hydrodynamic properties of rigid macromolecular structures obtained from electron microscopy". European Biophysics Journal 30, 457-462 (2001).  

 

140. M.L. Ferrer, R. Duchowicz, B. Carrasco,  J. García de la Torre and A. U. Acuña. "The Conformation of Serum Albumin in Solution. A Combined Phosphorescence Depolarization-Hydrodynamic Modeling Study". Biophysical Journal 80, 2422-2430 (2001).  

 

139. F.G. Díaz, B. Carrasco, M.C. López Martínez and J. García de la Torre. "Transient Electric Birefringence of Segmentally Flexible Macromolecules in Electric Fields of Arbitrary Strength". Journal of Physical Chemistry 104, 12339-12346 (2000).  

 

138. J. García de la Torre, M.L. Huertas and B. Carrasco. "HYDRONMR: Prediction of NMR Relaxation of Globular Proteins from Atomic-Level Structures and Hydrodynamic Calculations". Journal of Magnetic Resonance 147, 138-146 (2000).  

 

137. M.X. Fernandes, J. García de la Torre and M.A.R.B. Castanho. "A Brownian Dynamics Simulation of an acyl chain and a trans-parinaric acid molecule confined in a phospholipid bilayer in the gel and liquid-crystal phases". Journal of Physical Chemistry 104, 11579-11584 (2000).  

 

136. J. García de la Torre, M.L. Huertas  and  B. Carrasco. "Calculation of Hydrodynamic Properties of Globular Proteins from their Atomic-Level Structure". Biophysical Journal 78, 719-730 (2000).  

 

135. M.X. Fernandes, M.L. Huertas, M.A.R.B. Castanho and J. García de la Torre. "Conformation and dynamics of a C16 saturated hydrocarbon chain confined in a model membrane". Biochemica et Biophysica Acta (Biomembranes) 1463, 131-141 (2000).

 

134. J.G. Hernández Cifre and J. García de la Torre. "Steady-state properties and dynamic behavior of polymer chains in dilute solution under elongational flow". Macromolecular Symposia 146, 125-131 (1999).

 

133. B. Carrasco and J. Garcia de la Torre. "Universal size-independent quantities for rigid and flexible macromolecules". Progress in Colloid and Polymer Science 113, 81-86 (1999).

 

132. B. Carrasco, F.G. Diaz, M.C. López Martínez and J. García de la Torre. "Birefringence, Deformation and Scattering of Segmentally Flexible Macromolecules Under an External Agent. Steady-State Properties in an Electric Field". Journal of Physical Chemistry 103, 7822-7830 (1999).  

 

131. B. Carrasco and J. García de la Torre. "Improved hydrodynamic interaction in macromolecular bead models". Journal of Chemical Physics 111, 4817-4826 (1999).  

 

130. B. Carrasco, J. Garcia de la Torre, O. Byron, D. King, C.Walters, S. Jones  and S.E. Harding. "Novel Size-Independent Modelling of Dilute Solution Conformation of the Immunoglobulin IgG Fab' Domain Using SOLPRO and ELLIPS". Biophysical  Journal 77, 2902-2910 (1999).  

 

129. B. Carrasco, J. García de la Torre and P. Zipper. "Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres". European  Biophysics Journal 28, 510-515 (1999).  

 

128. M.X.Fernandes, M.L. Huertas, M. Castanho and J.García de la Torre. "Simulation of the distribution and diffusion of a rigid amphipatic molecule embedded in a model membrane". Progress in Colloid and Polymer Science 79, 41-53 (1999).

 

127. B. Carrasco and J. Garcia de la Torre. "Hydrodynamic Properties of Rigid Particles. Comparison of Different Modelling and Computational Procedures". Biophysical Journal 76, 3044-3057 (1999).  

 

126. J.G. Hernandez Cifre and J. García de la Torre. "Steady-state behavior of dilute polymers in elongational flow. Dependence of the critical elongational rate on chain length, hydrodynamic interaction and excluded volume". Journal of Rheology 43, 339-358 (1999).

 

125. J. García de la Torre, B. Carrasco and S.E. Harding. "Calculation of NMR relaxation, covolume and scattering-related properties of bead models using the SOLPRO computer program". European Biophysics Journal 28, 119-132 (1999).  

 

124. B. Carrasco, J. García de la Torre and Stephen E. Harding. "Models for the multisubunit conformation of oil-seed globulins". Biochemical Society Transactions 26, 721-725 (1998).

 

123. J. G. Hernández Cifre and J. García de la Torre. "Simulation of polymer solutions in steady elongational flow". "Progress and Trends in Rheology V". ISBN 3-7985-1128-4, I. Emri and R. Cvelbar, Editors. pp. 332-333. Steinkopff, Darmstadt, Alemania (1998).

 

122. S.E. Harding, B. Carrasco and J.García de la Torre. "New strategies for the modelling of antibody structure in dilute solution". Glycobiology 8, 114-114 (1998).

 

121. J. García de la Torre, S.E. Harding and B. Carrasco. "Advances in modelling solution properties of macromolecules and particles". Biochemical Society Transactions 26, 716-721 (1998).

 

120. B. Carrasco, J. García de la Torre and Stephen E. Harding. "Usefulness of the bead modelling algorithm SOLPRO for modeling the conformation of seed globulins". "In  Plant Proteins from European Crops. Food and Non-food applications",Gouégen and Y. Popineau, Editors. pp. 152-155. Springer, Berlín, Alemania (1998).

 

119. B. Carrasco, S.E. Harding  y J. García de la Torre. "Bead Modelling Using HYDRO and SOLPRO of the conformation of multisubunits proteins: Sunflower and Rape-seed 11S Globulins". Biochemical Society Transactions 74, 127-133 (1998).

 

118. J. García de la Torre and B. Carrasco. "Intrinsic viscosity and rotational diffusion of bead models for rigid macromolecules and bioparticles". European Biophysics Journal 27, 549-557 (1998).  

 

117. J.G. Hernández Cifre and J. García de la Torre. "Simulation of Polymers in Dilute Solution under Elongational Flow". Journal of Non-Crystalline Solids 235, 717-722 (1998).

 

116. J.J. López Cascales, J.G. Hernández Cifre and J. García de la Torre. "Anaesthetic Mechanism on a Model Biological Membrane: A Molecular Dynamics Simulation Study". Journal of Physical ChemistryB. 102,  625- 631 (1998).  

 

115. M.L. Huertas, S. Navarro, M.C. López Martínez and J. García de la Torre. "Simulation of the Conformation and Dynamics of a double-helical model for DNA". Biophysical Journal 73, 3142-3153 (1997).

 

114. J. Garcia de la Torre, J.G. Hernandez Cifre, J.J. López Cascales and K.D. Knudsen. "Conformación and dinámica de macromoléculas en disolución bajos flujos intensos".En "Materiales Poliméricos". ISBN 84-8.498-479-6, J.M. Gómez, A.B. Martínez, J.A. Subirana y J.I. Velasco, Editores.pp. 59-62. Grupo Especializado de Polímeros, España (1997).

 

113. J.J. López Cascales and J. García de la Torre. "Effect of lithium and sodium ions on a charged membrane of dipalmitoylphospatydil serine. A study by molecular dynamics simulation". Biochemica et Biophysica Acta 1330, 145-156 (1997).

 

112. K.D. Knudsen, J.G. Hernández Cifre and J. García de la Torre. "Chain Elongation and Fracture of Flexible Polymers in Transient Extensional Flow of Dilute Solutions". Colloid and Polymer Science 275, 1001-1009 (1997).

 

111. J.J. López Cascales, M.L. Huertas and J. García de la Torre. "Molecular Dynamics Simulation of a Dye Molecule in the Interior of a Bilayer 1,6-diphenyl-1,3,5-hexatriene in Dipalmitoylphosphatidylcholine". Biophysical Chemistry 69, 1-8 (1997).

 

110. J. García de la Torre, B. Carrasco and S. E. Harding. "SOLPRO Theory and Computer Program for the Prediction of Solution Properties of Rigid Macromolecules and Bioparticles". European Biophysics Journal 25(5/6), 361-372 (1997).

 

109. A.U. Acuña, M.L. Ferrer, B. Carrasco, J. García de la Torre and R. Duchowicz. "The disk-shaped conformation of serum albumin in solution : A phosphorescence depolarization Brownian Dynamics combined study". Progress in  Biophysics and  Molecular Biology  2(3)  44-44 (1996).

 

108. S. Navarro, B. Carrasco, M. C. López Martínez  and J. García de la Torre. "Deformation and Birefringence of Flexible Polymer Chains under External Forces or Electric Fields". Journal of  Polymer Science B. Polymer Physics 35, 689-697 (1997).

 

107. A.D. Molina García, L.A. De  Pieri,  I.  Ludlow,  W.M. Waites, J. García de la Torre and S.E. Harding. "Comparison  of  Quasi-Elastic  Scattering  and Laser Diffractometry as Non-Destructive Probes into the Structure of Bacillus sphaericus Spores Produced at Different Temperatures". Applied and Environmental Microbiology 62, 1699-1704 (1996).  

 

106. B. Carrasco, A. Pérez Belmonte, M.C. López Martínez and J. García de la Torre. "Transient Orientation and Electrooptical Properties of Axially Symmetric Macromolecules in an Electric Field of Arbitrary Strength". Journal of  Physical Chemistry 100, 9900-9905 (1996).  

 

105. K.D. Knudsen, M.C. López  Martínez and J. García de la Torre. " Fracture of DNA in Transient Extensional Flow. A Numerical Simulation Study". Biopolymers 39, 435-444 (1996).  

 

104. K.D. Knudsen, J.G. Hernández Cifre and J. García  de la Torre. "Conformation and Fracture of Polystyrene Chains in Extensional Flow Studied by Numerical Simulation". Macromolecules 29, 3603-3610 (1996).  

 

103. M.L. Huertas, V. Cruz, J.J. López Cascales, A.U. Acuña and J. García de la Torre. "Distribution and Diffusivity of a Probe Molecule in the Interior of a Bilayer Membrane". Biophysical Journal 71, 1428-1439 (1996).

 

102. J.J. López Cascales, H.J.C. Berendsen and J. García de la Torre. "Molecular Dynamics Simulation of Water Between Two Charged Layers of Dipalmitoylphosphatidylserine". Journal of  Physical Chemistry 100, 8621-8627 (1996).  

 

101. J.J. López Cascales, J. García de la Torre,  S.J. Marrink and H.J.C. Berendsen. "Molecular Dynamics Simulation of a Charged Biological Membrane". Journal of  Chemical Physics 104, 2713-2720 (1996).

 

100. K.D.Knudsen, A. Elgsaeter and J. García de la Torre. "Gaussian Chains with Excluded Volume and Hydrodynamic Interaction: Shear Rate Dependence of Radius of Gyration, Intrinsic Viscosity and Flow Birrefringence". Polymer 37, 1317-1322 (1996).

 

99. P. Skjetne, D. Knudsen, J. García de la Torre and A. Elgsaeter. "Numerical Analysis of the Rotational Relaxation Time of Spectrin Segments and Spectrin Heterodimer in Dilute Aqueous Solution". Macromolecular Theory and Simulation 4, 253-275 (1995). .

 

98. K.D. Knudsen, J.G. Hernández Cifre, J.J. López Cascales and J. García de la Torre. "Simulation of Fracture of Flexible Polymer Chains in Transient Elongational Flow". Macromolecules 28, 4660-4664 (1995).  

 

97. S. Navarro, M.C. López Martínez and J. García de la Torre. "Relaxation Times in  Transient  Electric  Birefringence  and Electric-Field Light Scattering of Flexible Polymer Chains". Journal of  Chemical Physics 103, 7631-7639 (1995).

 

96. J.J. López Cascales, F.G. Díaz and J. García de la Torre. "Simulation of Non-Linear Models for Polymer Chains in Flowing Solutions". Polymer 36, 345-351 (1995).

 

95. F.G. Díaz and J. García de la Torre. "Técnicas computacionales para el   estudio de las relaciones estructura-dinámica en macromoléculas biológicas".En "Biología Computacional".pp.47-64. Andrés Moya, Universidad de Valencia, España  (1994).

 

94. J. García de la Torre. "Hydrodynamics of Segmentally Flexible Biological Macromolecules". European Biophysics Journal 23, 307-322 (1994).

 

93. F.G. Díaz and J. García de la Torre. "Viscoelastic Properties of Semiflexible Macromolecules in Solution: Brownian Dynamics Simulation of a Trumbell Model". Macromolecules 27, 5371-5376 (1994).  

 

92. J. García de la Torre and J.M. Andreu. "Hydrodynamic Analysis of Tubulin Dimer and Double Rings". Journal of Molecular Biology 238, 223-225 (1994).  

 

91. J. García de la Torre, S. Navarro, M.C. López Martínez, F.G. Díaz  and  J.J. López Cascales. "HYDRO: A Computer Software for the Prediction of Hydrodynamic Properties of Macromolecules". Biophysical Journal 67, 530-531 (1994).

 

90. J.J. López Cascales and J. García de la Torre. "Brownian  Dynamics  Simulation  of   Polymer  Fracture  in Transient Elongational Flow". Polymer Preprints 35, 110-111 (1994).

 

89. J. García de la Torre, S. Navarro and M.C. López Martínez. "Hydrodynamic Properties of a Double-helical Model for DNA". Biophysical Journal 66, 1573-1579 (1994).

 

88. J.J. López Cascales, J. García de la Torre. "Simulation of Deformation and Fracture of Polymer Chains in Flowing Solution". Journal of Non-Crystalline Solids 172, 823-829 (1994).

 

87. J.J. López Cascales and J. García de la Torre. " "Brownian dynamics of macreomolecular chains in shear and elongational flow "Research Trends, Council for Scientific Research Integration 2, 1-8 (1993).

 

86. K.D. Knudsen, A. Elgsaeter, J.J. López Cascales and J. García de la Torre. "Flow Birefringence of Flexible Polymer Chains in Steady Shear Flow. A Brownian Dynamics Simulation". Macromolecules 26, 3851-3857 (1993).  

 

85. F.G. Diaz, J.J. López Cascales and J. García de la Torre. "Bead-Model Calculation of Scattering Diagrams. Brownian Dynamics  Simulation  Study of Flexibility in Immunoglobulin IgG1". Journal of Biochemical and Biophysical Methods 26, 261-271 (1993).

 

84. J. García de la Torre and J.J. López Cascales. "Simulación de la conformación, dinámica and fractura de polímeros en  flujos". Anales de Quimica 89, 279-287 (1993).

 

83. A.D. Molina García, S.E. Harding, F.G. Diaz and J. García de la Torre. "Effect of Coat Protein mutations in bacteriophage fd studied  by  Sedimentation  Analysis". Biophysical Journal 63, 1293-1298 (1992).

 

82. J.J. López Cascales and J. García de la Torre. "Simulation of Polymer Chains in Elongational Flow: Kinetics of Chain Fracture and Fragment Distribution". Journal of Chemical Physics 97, 4559-4554 (1992).

 

81. J.J. Freire, J. García de la Torre. "Sedimentation Coefficients of Flexible Polymer Chains". In "Analytical Centrifugation in Polymer Science and Biochemistry", S.E. Harding and A. Rowe, Editors. pp. 346-359, The Royal Society of Chemistry, Reino Unido (1992).

 

80. J. García de la Torre. "Sedimentation Coefficients of Complex Biological  Particles". In "Analytical Centrifugation in Polymer Science and Biochemistry" , S.E. Harding and A. Rowe, Editors. pp. 333-345 (1992).

 

79. J.J. López Cascales, S. Navarro and J. García de la Torre. "Deformation, Orientation and Scattering from Polymer Chains in Shear  Flow. A Brownian  Dynamics Simulation Study". Macromolecules 25, 3574-3580 (1992).  

 

78. A. Rey, J.J. Freire and J. García de la Torre. "Brownian Dynamics Simulation of Flexible Polymer Chains with Excluded Volume and Hydrodynamic Interaction". Polymer 33, 3477-3482 (1992).

 

77. J.J. López Cascales, J. García de la Torre. "Shear Rate Dependence of the Intrinsic Viscosity of Bead and Spring Chains. Hydrodynamic Interaction and Excluded Volume Effects". Polymer 32, 3359-3363 (1991).

 

76. A. Rey, J.J. Freire, and J. García de la Torre. "Translational Diffusion Coefficients, Relaxation Times and Quasielastic Ligth Scattering of Flexible Chains". Macromolecules 24, 4666-4672 (1991).  

 

75. J.J. López Cascales and J. García de la Torre. "Simulation of Polymer Chains in Elongational Flow. Steady-State Properties and Chain Fracture". Journal of Chemical Physics 95, 9384-9392 (1991).

 

74. A. Iniesta, M.C. López Martínez and J. García de la Torre. "Rotational Brownian Dynamics of Semiflexible Broken Rods". Journal of Fluorescence 1, 129-134 (1991).

 

73. A. Pérez Belmonte, M.C. López Martínez and J. García de la Torre. "Time Course of the Orientation and Birefringence of Axially Symmetric Macromolecules Upon Reveral of an Electric Field of Arbitrary Strength". Journal  of Physical Chemisty 95, 5661-5664 (1991).  

 

72. J.M. García Bernal, M.M. Tirado and J. García de la Torre. "Chain-Sphere Models for Complexes of Biological Interest: Monte Carlo Simulation and Hydrodynamic Properties". Makromoleculare Chemie 192, 935-943 (1991).

 

71. S.E. Harding, G. Berth, A. Ball, J.R. Mitchell, and J. García de la Torre. "The Molecular Weight Distribution and Conformation of Citrus Pectins in Solution Studied by Hydrodynamics". Carbohydrate Polymers 16, 1-15 (1991).

 

70. J.M. García Bernal, M.M. Tirado, J. García de la Torre. "Monte Carlo Calculation of Hydrodynamic Properties of Linear and Cyclic Chains in Good Solvents". Macromolecules 24, 593-598 (1991).  

 

69. A. Pérez Belmonte, M.C. López Martínez and J. García de la Torre. "Buildup of Electrooptic Properties of Axially Symmetric Macromolecules in Fields of Arbritrary Strength Studied by Brownian Dynamics Simulation". Journal of Physical Chemisty 95, 952- 955 (1991).  

 

68. A. Rey, J.J. Freire and J. García de la Torre. "Brownian Dynamics Simulation of non-linear Gaussian Chains with Fluctuating Hydrodynamic Interaction. II. Rings". Macromolecules 23, 3953-3957 (1990).  

 

67. A. Rey, J.J. Freire and J. García de la Torre. "Brownian Dynamics Simulation of non-linear Gaussian Chains with Fluctuating Hydrodynamic Interaction. I. Star Chains". Macromolecules 23, 3948-3953 (1990).  

 

66. F.G. Diaz , A. Iniesta, J. García de la Torre. "Hydrodynamic Interaction Study of Flexibility in Immunoglobulin IgG1 Using Brownian Dynamics Simulation of a Simple Model". Biopolymers 29, 547-554 (1990).

 

65. A. Rey, J.J. Freire and  J. García de la Torre. "Frequency-Dependent Viscosity of Linear, Ring and Star Gaussian Chains with Fluctuating Hydrodynamic Interaction". Journal of Chemical Physics 92, 6278-6282 (1990).

 

64. J.M. García Bernal, M.M. Tirado, J.J. Freire, J. García de la Torre. "Monte Carlo Calculation of Hydrodynamic Properties of Cyclic Polymers in Ideal Solution". Macromolecules 23, 3357-3362 (1990).  

 

63. F.G. Diaz , J.J. Freire, and J. García de la Torre. "Viscoelastic Properties of Simple, Flexible and Semirigid Models from Brownian Dynamics Simulation". Macromolecules 23, 3144-3149 (1990).  

 

62. J.J. López Cascales and J. García de la Torre. "Hydrodynamic Interaction Effects on the Conformation of Flexible Chains in Shear Flow". Macromolecules 23,  809- 813 (1990).  

 

61. A. Iniesta and J. García de la Torre. "A Second-Order Algorithm for the Simulation of the Brownian Dynamics of Macromolecular Models". Journal of Chemical Physics 92, 2015-2019 (1990).

 

60. J.J. García Molina, M. C. López Martínez and  J. García de la Torre. "Computer Simulation of Hydrodynamic Properties of Semiflexible Macromolecules. Randomly Broken Chains, Wormlike Chains and DNA Properties". Biopolymers 29, 883-900 (1990).

 

59. J. García de la Torre. "Hydrodynamic Properties of Macromolecular Assemblies".In " Dynamic Properties of Macromolecular Assemblies”, pp 3-31 The Royal Society of Chemistry, Reino Unido (1989).

 

58. A. Rey, J.J. Freire and J. García de la Torre. "Brownian Dynamics of a Flexible Polymer. Internal Modes and  Quasi-elastic Light Scattering". Journal of Chemical Physics 90, 2035-2041 (1989).

 

57. A. Iniesta and J. García de la Torre. "Electric Birefringence of Segmentally Flexible Macromolecules with Two Subunits". Journal of  Chemical Physics 90, 5190-5197 (1989).

 

56. F.G. Diaz , J. García de la Torre and J.J. Freire. "Hydrodynamic Interaction Effects in the Rheological Properties of  Hookean Dumbbells in Steady Shear Flow. A Brownian Dynamics Simulation". Polymer 30, 259-264 (1989).

 

55. P. Mellado, A. Iniesta, F.G. Diaz and J. García de la  Torre. "Diffusion Coefficients of Segmentally Flexible Macromolecules with Two Subunits. Study of Broken Rods". Biopolymers 27, 1771-1786 (1988).

 

54. A. Iniesta, F.G. Diaz  y J. García de la Torre. "Transport Properties of Rigid Bent-Rod Macromolecules and Semiflexible Broken Rods in the Rigid Body Approximation". Biophysical Journal 54, 269-275 (1988).

 

53. F.G. Diaz  and J. García de la Torre. "Simulation of the Rotational Brownian Dynamics of a Simple Segmentally Flexible Model: The Elastic Trumbbell". Journal of Chemical Physics 88, 7698-7705 (1988).

 

52. A. Solvez, A. Iniesta and J. García de la Torre. "Radius of Gyration of Multisubunits Macromolecules. Theory and Application to Myosin Heads, Myosin Rod and Whole Myosin". International Journal of Biological Macromolecules 10, 39-43 (1988).

 

51. F.G. Diaz , A. Iniesta and J. García de la Torre. "Brownian Dynamics Simulation of Rotational Correlation Functions of  Simple Rigid Models". Journal of Chemical Physics 87, 6021-6027 (1987).

 

50. A. Rey, J.J. Freire and J. García de la Torre. "Monte Carlo Calculations for Linear and Star Polymers with Intramolecular Interactions. 4. Dimensions and Hydrodynamic Properties below the Theta State". Biophysical Journal 52, 303-310 (1987).

 

49. A. Rubio, J.J. Freire and J. García de la Torre. "Hydrodynamic Properties of Short Polydimethylsiloxane Chains. Numerical Results and Comparison with Experimental Data". Macromolecules 20, 1620-1626 (1987).  

 

48. M.C. López Martínez and J. García de la Torre. "Brownian Dynamics Simulation of Restricted Rotational Diffusion". Biophysical Journal 52, 303-310 (1987).

 

47. P. Espinosa and J. García de la Torre. "Theoretical Prediction of Translational Diffusion Coefficients of Small Rigid Molecules from Their Molecular Geometry". Journal of Physical Chemistry 91, 3612-3616 (1987).  

 

46. A. Iniesta and J. García de la Torre. "Rotational Diffusion Coefficients of a Small, Spherical Subunit Flexibly Thethered to a Larger Sphere". European Biophysics Journal 14, 493-498 (1987).

 

45. J. García de la Torre, M.C. López Martínez and J.J. García Molina. "Approximate Methods for Calculating Rotational Diffusion Constants of Rigid Macromolecules. Macromolecules 20, 661-666 (1987).  

 

44. A. Rey, J.J. Freire and J. García de la Torre. "Monte Carlo Calculations for Linear and Star Polymers. 3. Dimensions and Hydrodynamic Properties in Good Solvents". Macromolecules 20, 342-346 (1987).  

 

43. B. Hammouda, J.J. García Molina and  J. García de la Torre. "Static Scattering Function for Randomly Broken Chains". Journal of Chemical Physics 85, 4120-4122 (1987).

 

42. J.J. García Molina and J. García de la Torre. "The Randomly Broken Chain as a Semiflexible Macromolecular Model. Computer Simulation of Statistical Properties". Journal of Chemical Physics 84, 4026-4030 (1986).

 

41. J.J. Freire, A. Rey and  J. García de la Torre. "Monte Carlo Calculations for Linear and Star Polymers 2. NonPre-averaged Study of Hydrodynamic Properties at the Q State". Macromolecules 19, 457-462 (1986).  

 

40. J.J. Freire, A. Rey and J. García de la Torre. "Theoretical Calculation of  Diffusion  Coefficient  and  Viscosity  of  Star Polymers in Solution". In "Integration of Fundamental Polymer Science and Technology”. pp. 108-111. Elsevier, Holanda (1985).

 

39. J. García de la Torre, P. Mellado and  V. Rodes. "Diffusion Coefficients of Segmentally Flexible Macromolecules with Two Spherical Subunits". Biopolymers 24, 2154-2164 (1985).

 

38. J.  García  de  la  Torre,  P.  Mellado and  M.C.  López  Martínez. "Caracterización de la estructura del subfragmento S1 de la miosina". Anales de Ciencias 44, 31-36 (1985).

 

37. J.  García  de  la  Torre,  P.  Mellado and  M.C.  López Martínez. "Estudio de la dinámica de macromoléculas articuladas". Anales de Ciencias 44, 25-29 (1985).

 

36. J. García de la Torre, M.C. López Martínez, M.M. Tirado and J.J. Freire. "Monte Carlo Study of Hydrodynamic Properties of Flexible Linear Chains. Analysis of  Several Approximate Methods". Macromolecules 17, 2715-2722 (1984).  

 

35. J.J. García Molina and J. García de la Torre. "Conformational Properties of Wormlike and Hinged Rods. A Comparative Study". International Journal of Biological Macromolecules 6,  170- 174 (1984).

 

34. M.M. Tirado, M.C. López Martínez and J. García de la Torre. "Comparison of Theories for the Translational and Rotational Diffusion Coefficients of Rodlike Monte Carlo. Application to Short Rodlike Cylinders". Journal of Chemical Physics 81, 2047-2052 (1984).

 

33. M.C. López Martínez, V. Rodes and J. García de la Torre. "Estimation of the Shape and Size of Fibrinogen in Solution from its Hydrodynamic Properties using Theories for Bead models and Cylinders". International Journal of Biological Macromolecules 6, 261-266 (1984).

 

32. J.J. Freire, R. Prats, J. Pla and J. García de la Torre. "Hydrodynamic Properties of Flexible Branched Chains. Monte Carlo Nonpeaveraged Calculations for Stars and Preaveraged Results for Combs". Macromolecules 17, 1815-1821 (1984).  

 

31. J. García de la Torre, M.C. López Martínez and M.M. Tirado. "Dimensions of Short Rodlike  Macromolecules  from  Translational  and Rotational Diffusion Coefficients. Study of the Gramicidin Dimer". Biopolymers 23, 611-615 (1984).

 

30. M.C. López Martínez  and J. García de la Torre. "Transport Properties of Rigid, Symmetric Oligomeric Subunit Structures Composed of Prolate Ellipsoidal Subunits". Biophysical Chemistry 18, 268-279 (1983).

 

29. M. Garrigos, E. Morel and J. García de la Torre. "Reinvestigation of the Shape and State of Hydration of the Skeletal Myosin Subfragment 1 Monomer in Solution". Biochemistry 22, 4961-4969 (1983).  

 

28. J. García de la Torre and V. Rodes. "Effects from Bead Size and Hydrodynamic Interactions on the Translational and Rotational Coefficients of Macromolecular Bead Models". Journal of Chemical Physics 79, 2454-2460 (1983).

 

27. V. Rodes, M.C. López Martínez and J. García de la Torre. "Mejoras en el cálculo de magnitudes rotacionales de macromoléculas". Anales de Ciencias 39, 327-339 (1983). 

 

26. J. García de la Torre, M.C. López Martínez, M.M. Tirado and J.J. Freire. "Approximate Methods for Calculating Hydrodynamic Properties of Macromolecules in Dilute Solution. Theory and Application to Rigid Structures". Macromolecules 16, 1121-1127 (1983).   

 

25. S.C. Harvey, P. Mellado and J. García de la Torre. "Hydrodynamic Resistance and Diffusion Coefficients of Segmentally Flexible Macromolecules with two Subunits". Journal of Chemical Physics 78, 2081-2090 (1983).

 

24. J.J. Freire and J. García de la Torre. "Double-Sum Formulas for Hydrodynamics of Macromolecular Structures". Macromolecules 16, 331-332 (1983).  

 

23. M.C. López Martínez and J. García de la Torre. "Rotational Diffusion Tensor of Small Rigid Molecules". Chemica Physics Letters 88, 564-567 (1982).

 

22. P. Mellado and J. García de la Torre. "Steady State and Transient 22. P. Mellado and J. García de la Torre. "Steady State and Transient Electric Birefringence of Solutions of bent-rod macromolecules". Biopolymers 21, 1857-1871 (1982).

 

21. J. García de la Torre and J.J. Freire. "Intrinsic Viscosities and Translational Diffusion Coefficients of n-Alkanes in solution". Macromolecules 15, 155-159 (1982).  

 

20. J. García de la Torre, A. Jiménez and J.J. Freire. "Monte Carlo Calculation of Hydrodynamic Properties of Freely Jointed, Freely Rotating and Real Polymethylene Chains". Macromolecules 15, 148-154 (1982).  

 

19. J. García de la Torre. "Rotational Diffusion Coefficients". In "Molecular Electro-Optics”, S. Krause Editor. pp 75-103. Plenum Press, New York (1981).

 

18. J. García de la Torre and V. Bloomfield. "The Conformation of Myosin in Dilute Solution as Estimated From Hydrodynamic Properties". Biochemistry 19, 5118-5123 (1980).  

 

17. J.M. García Bernal and J. García de la Torre. "Transport Properties of Oligomeric Subunit Structures". Biopolymers 20, 129-139 (1981).

 

16. J. García de la Torre and V. Bloomfield. "Hydrodynamic Properties of Complex, Rigid, Biological Macromolecules. Theory and Applications". Quarterly Reviews of Biophysics 14, 81-139 (1981).

 

15. M.M. Tirado and J.García de la Torre. "Rotational Dynamics of Rigid, Symmetric Top Macromolecules". Journal of Chemical Physics 73, 1986-1993 (1980).

 

14. S.H. Harvey and J. García de la Torre. "Coordinate Systems for Modelling the Hydrodynamic Resistance and Diffusion Coefficients of Irregurarly Shaped Rigid Macromolecules". Macromolecules 13, 960-964 (1980).  

 

13. J.J. Freire and J. García de la Torre. "Quasi-elastic Light Scattering from Polymers in Solution. A Simple Application of the Rouse-Zimm Model". Chemical Physics 49, 139-146 (1980).

 

12. J.M. García Bernal and J. García de la Torre. "Transport Properties and Hydrodynamic Centers of Rigid Macromolecules with Arbitrary Shape". Biopolymers 19, 751-766 (1980).

 

11. J.J. Freire and J. García de la Torre. "A Generalized Bead and Spring Model for the Dynamics of DNA in Solution. Application to the Intrinsic Viscosity". Macromolecules 12, 971-978 (1979).  

 

10. M.M. Tirado and J. García de la Torre. "Translational Friction Coefficients of Rigid, Symmetric Top Macromolecules". Journal of Chemical Physics 71, 2581-2587 (1979).

 

9. J. García de la Torre, V.A. Bloomfield and R.W. Wilson. "Rotational Diffusion Coefficients of Complex Macromolecules". In: "Electro-optics of Macromolecules and Colloids”, B.R. Jennigs, Editor.pp. 183-188. Plenum Press, New York (1979).

 

8. J. García de la Torre and V.A. Bloomfield. "Hydrodynamic Properties of Macromolecular Complexes. IV. Intrinsic  Viscosity Theory with Applications to Once-broken Rods and Multisubunit Proteins". Biopolymers 17, 1605-1627 (1978).

 

7. J. García de la Torre and V.A. Bloomfield. "Hydrodynamic Theory of Swimming of Flagellated Microorganisms". Biophysical Journal 20, 48-67 (1977).

 

6. J. García de la Torre and V.A. Bloomfield. "Hydrodynamic Properties of Macromolecular Complexes. III. Bacterial Viruses". Biopolymers 16, 1779-1793 (1977)

 

5. J. García de la Torre and V.A. Bloomfield. "Hydrodynamic Properties of Macromolecular Complexes. II. Rotation". Biopolymers 16, 1765-1778 (1977).

 

4. J. García de la Torre and V.A. Bloomfield. "Hydrodynamic Properties of Macromolecular Complexes. I. Translation". Biopolymers 16, 1747-1763 (1977)

 

3. J. García de la Torre and A. Horta. "Anisotropic Light Scattering from the Rigid Structure of DNA". Polymer Journal 9, 33-39 (1977).

 

2. J. García de la Torre and A. Horta. "Sedimentation Coefficient and X-Ray Scattering of Double-Helical Model for Deoxyribonucleic Acid". Journal of Physical Chemistry 80, 2028-2035 (1976).  

 

1.- J. García de la Torre, J.J. Freire and A. Horta. "A Bead  and Spring Model for the Stiffness of DNA". Biopolymers 14, 1327-1335 (1975)