Computer programs

NOTE: All the programs come with User Manual. However, we advise to consult our HYDRO frequently asked questions, the HydroFAQs

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The HYDRO Suite Monte Carlo & Brownian Simulations Other programs
HYDRO++
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Solution properties of bead models for rigid molecules

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SIMUFLEX
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Brownian dynamics simulation and solution properties calculation of flexible bead and connector models of macromolecules

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SingleHYDFIT & MultiHYDFIT
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Fitting multi-property and multi-sample sets of experimental data to simple models like rigid rods, disks or ellipsoids, or semiflexible wormlike chains

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HYDROPRO
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Solution properties of rigid molecular structures (globular proteins, nucleic acids, etc) with atomic-level resolution, calculated from atomic coordinates taken from a PDB file

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MONTEHYDRO
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Program for Monte Carlo generation and hydrodynamic calculation of flexible bead-and-connector models

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ORIEL
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Orientation (alignment tensor) of rigid molecules by planar obstacles and calculation of NMR residual dipolar couplings of globular proteins

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HYDRONMR & FastHYDRONMR
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Translational and rotational diffusion and NMR relaxation (T1, T2, NOE, etc) of quasi-rigid globular proteins from atomic coordinates taken from a PDB file

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MULTISUB
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Ancillary program for conformational search or Monte Carlo generation of multiple conformations of models composed of ellipsoidal and spherical subunits.

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SOLPRO
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Other solution properties calculated from the output of the HYDROXXX programs

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HYDROSUB
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Solution properties of bead-shell models for rigid particles composed of ellipsoidal (prolate, spherical and oblate) subunits

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MULTIHYDRO
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Ancillary program for conformational search or Monte Carlo generation of multiple conformations of bead models

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VIS-SC
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Tool for the experimental determination of intrinsic viscosity from a single solution viscosity determination (improved, single-point, Solomon-Ciuta method)

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HYDROMIC
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Solution properties of macromolecules and macromolecular complexes with a 3D density map, obtained by cryo-electron microscopy or other techniques

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POLYCARLO
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A teaching computer experiment: Prediction of conformation and solution properties of flexible-chain polymers

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VISFIT
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Tool for experimental determination of intrinsic viscosities

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HYDROPIX
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Solution properties of bead-shell models for rigid particles whose shape and size is specified by the user in FORTRAN code

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BrownRig
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Brownian dynamics simulation of a rigid particle in the presence of fields or obstacles

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VisualBeads
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Visualization of bead-and-connector models

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