Computer programs

NOTE: All the programs come with User Manual. However, we advise to consult our HYDRO frequently asked questions, the HydroFAQs

The HYDRO Suite	Monte Carlo & Brownian Simulations	Other programs
HYDRO++ Solution properties of bead models for rigid molecules	SIMUFLEX Brownian dynamics simulation and solution properties calculation of flexible bead and connector models of macromolecules	SingleHYDFIT & MultiHYDFIT Fitting multi-property and multi-sample sets of experimental data to simple models like rigid rods, disks or ellipsoids, or semiflexible wormlike chains
HYDROPRO Solution properties of rigid molecular structures (globular proteins, nucleic acids, etc) with atomic-level resolution, calculated from atomic coordinates taken from a PDB file	MONTEHYDRO Program for Monte Carlo generation and hydrodynamic calculation of flexible bead-and-connector models	ORIEL Orientation (alignment tensor) of rigid molecules by planar obstacles and calculation of NMR residual dipolar couplings of globular proteins
HYDRONMR & FastHYDRONMR Translational and rotational diffusion and NMR relaxation (T1, T2, NOE, etc) of quasi-rigid globular proteins from atomic coordinates taken from a PDB file	MULTISUB Ancillary program for conformational search or Monte Carlo generation of multiple conformations of models composed of ellipsoidal and spherical subunits.	SOLPRO Other solution properties calculated from the output of the HYDROXXX programs
HYDROSUB Solution properties of bead-shell models for rigid particles composed of ellipsoidal (prolate, spherical and oblate) subunits	MULTIHYDRO Ancillary program for conformational search or Monte Carlo generation of multiple conformations of bead models	VIS-SC Tool for the experimental determination of intrinsic viscosity from a single solution viscosity determination (improved, single-point, Solomon-Ciuta method)
HYDROMIC Solution properties of macromolecules and macromolecular complexes with a 3D density map, obtained by cryo-electron microscopy or other techniques	POLYCARLO A teaching computer experiment: Prediction of conformation and solution properties of flexible-chain polymers	VISFIT Tool for experimental determination of intrinsic viscosities
HYDROPIX Solution properties of bead-shell models for rigid particles whose shape and size is specified by the user in FORTRAN code	BrownRig Brownian dynamics simulation of a rigid particle in the presence of fields or obstacles	VisualBeads Visualization of bead-and-connector models

IMPORTANT : See compilers and platforms for a description of the compiler options in the various plataforms