Version 7c, December 2005
J. García de la Torre and B. Carrasco, "Hydrodynamic properties of rigid macromolecules composed of ellipsoidal and cylindrical subunits", Biopolymers 63, 163-167 (2002).
For the utilization of HYDROSUB along with the MONTESUB program, see:
J. García de la Torre, H.E. Pérez Sánchez, A. Ortega, J.G. Hernández, M.X. Fernandes, F.G. Díaz and M.C. López Martínez, "Calculation of the solution properties of flexible macromolecules: methods and applications" Eur. Biophys. J. 32, 477-486 (2003).
HYDROSUB is a computer program for the calculation of solution properties of a macromolecular or supramolecular structure modeled as an assembly of subunits having ellipsoidal and/or cylindrical shapes. The subunits are represented using a variation of the bead/shell method, which is particularly suitable for symmetric structures. The user just has to specify, for each subunit, the coordinates of their centers and the polar angles of their symmetry axis. Additionally, the model may contain spherical elements (beads) which are not shell-modelled
For more details, see the HYDROSUB 7c User Guide
Files for download:
FILE | TYPE | DESCRIPTION |
---|---|---|
hydrosub.pdf | First paper on HYDROSUB | |
montesubpaper.pdf | Paper describing 7c extensions | |
hydrosub7c.pdf | MS Word | User Guide, version 7c |
hydrosub7cmsd.exe | Executable | MS DOS/Windows |
hydrosub7clnx.exe | Executable | Linux |
hydrosub.dat | ASCII | Sample of main input file |
igg100.txt | ASCII | Sample of structural file |
igg100.res | ASCII | Individual results for igg100 |
igg100.sol | Binary | SOLPRO file igg100 |
igg100.vrml | VRML | VRML file for igg100 |
igg100.bea | PDB | PDB file for igg100 |
dimer001.txt | ASCII | Sample of structural file |
dimer001.res | ASCII | Individual results for dimer001 |
dimer001.sol | Binary | SOLPRO file dimer001 |
dimer001.vrml | VRML | VRML file for dimer001 |
dimer001.bea | PDB | PDB file for dimer001 |
dimer001.bmp | BMP | BMP image of dimer001 |
summary.txt | ASCII | Results from hydrosub.dat |
Return to Computer programs