HYDROPIX

(including MAKEPIXB)

 

Version 7c, February 2006

 

J. García de la Torre, "Building hydrodynamic bead-shell models for rigid bioparticles of arbitrary shape" Biophys. Chem., 94, 265-274 (2001).

 

HYDROPIX is a computer program for the calculation of solution properties of macromolecular or supramolecular structures having an arbitrary shape, using bead-shell models. The task of building and specifying the hydrodynamic model is left to the user, but for this purpose we provide an ancillary FORTRAN program, MAKEPIXB, which just requires some extra lines of code that specify the dimensions and shape of the structure.

For more details, see the HYDROPIX User Guide

 

Files for download:

FILE

TYPE

DESCRIPTION

hydropix.pdf

PDF

Paper on HYDROPIX

hydropix7c.pdf

PDF

User Guide

makepixb5a.for

FORTRAN

Program to make pixbit files

conditions.for

FORTRAN

One of the two include file

maxdims.for

FORTRAN

The other include file

hollowdisk.pxb

pixbit

Generated with these include files

hydropix5amsd.exe

Executable

MS DOS/Windows

hydropix5alnx.exe

Executable

Linux

hydropix.dat

ASCII

Sample of main input file

hollowdisk.res

ASCII

Results from the above files

hollowdisk-she.bea

ASCII - PDB

Visualization (RASMOL) of shell model


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